Index

A

acquiring (aghplctools.local_paths.AcquisitionSearch attribute) acquiring_instance() (aghplctools.local_paths.AcquisitionSearch class method) acquiring_instance_num_and_file() (aghplctools.local_paths.AcquisitionSearch class method) acquiring_path (aghplctools.local_paths.AcquisitionSearch attribute) AcquisitionSearch (class in aghplctools.local_paths) add_from_pulled() (aghplctools.data.time_course.HPLCTarget method) add_signal() (aghplctools.data.sample.HPLCSample method) add_value() (aghplctools.data.time_course.HPLCTarget method) aghplctools.data.batch (module) aghplctools.data.sample (module)

aghplctools.data.time_course (module) aghplctools.ingestion.csv (module) aghplctools.ingestion.text (module) aghplctools.local_paths (module) agilent_specification_string (aghplctools.data.sample.DADSignalInfo attribute) as_data_table() (aghplctools.data.sample.DADSignal method) as_dict() (aghplctools.data.sample.HPLCSampleInfo method) as_iterable_data_table() (aghplctools.data.sample.DADSignal method) auto_create() (aghplctools.data.sample.HPLCSampleInfo class method) auto_resolution() (aghplctools.data.sample.MSSpectrum method)

B

band_string (aghplctools.data.sample.DADSignal attribute) bandwidth (aghplctools.data.sample.DADSignal attribute) (aghplctools.data.sample.DADSignalInfo attribute)

batch_convert_signals_to_csv() (in module aghplctools.data.batch) batch_report_text_to_xlsx() (in module aghplctools.data.batch) bisect_slice() (in module aghplctools.data.sample) build_peak_regex() (in module aghplctools.ingestion.text)

C

check_or_locate_file() (in module aghplctools.data.sample) ChemStationConfig (class in aghplctools.local_paths) chunk_string() (in module aghplctools.ingestion.text) construct_from_env() (aghplctools.local_paths.ChemStationConfig class method) construct_from_ini() (aghplctools.local_paths.ChemStationConfig class method) core_path (aghplctools.local_paths.ChemStationConfig attribute) create_from_acaml() (aghplctools.data.sample.HPLCSample class method) (aghplctools.data.sample.HPLCSampleInfo class method) create_from_agilent_string() (aghplctools.data.sample.DADSignalInfo class method)

create_from_CH_file() (aghplctools.data.sample.DADSignalInfo class method) create_from_D_file() (aghplctools.data.sample.DADSpectrum class method) (aghplctools.data.sample.HPLCSample class method) (aghplctools.data.sample.MSSpectrum class method) create_from_DADSignalInfo() (aghplctools.data.sample.DADSignal class method) create_from_xml() (aghplctools.data.sample.HPLCSample class method) (aghplctools.data.sample.HPLCSampleInfo class method) current_file (aghplctools.local_paths.AcquisitionSearch attribute) current_num_and_file() (aghplctools.local_paths.AcquisitionSearch static method) current_number (aghplctools.local_paths.AcquisitionSearch attribute)

D

DADSignal (class in aghplctools.data.sample) DADSignalInfo (class in aghplctools.data.sample) DADSpectrum (class in aghplctools.data.sample) data_path (aghplctools.local_paths.ChemStationConfig attribute)

data_paths (aghplctools.local_paths.AcquisitionSearch attribute) date (aghplctools.data.sample.HPLCSampleInfo attribute) DEFAULT_INI_LOCATION (aghplctools.local_paths.ChemStationConfig attribute) DEFAULT_TIME_UNIT (aghplctools.data.sample.DADSignalInfo attribute) DEFAULT_WAVELENGTH_UNIT (aghplctools.data.sample.DADSignalInfo attribute)

E

extract_function_time_tic() (aghplctools.data.sample.MSSpectrum method)

F

find_acaml() (aghplctools.data.sample.HPLCSampleInfo static method) find_acquiring() (aghplctools.local_paths.AcquisitionSearch method)

find_and_get_metadata() (aghplctools.data.sample.HPLCSampleInfo class method) find_max_area() (in module aghplctools.data.time_course) functions (aghplctools.data.sample.MSSpectrum attribute)

G

get_band_intensities() (aghplctools.data.sample.DADSpectrum method) get_band_mean_intensity() (aghplctools.data.sample.DADSpectrum method) get_band_wavelengths() (aghplctools.data.sample.DADSpectrum method) get_by_data_path() (aghplctools.local_paths.ChemStationConfig class method) get_by_path() (aghplctools.local_paths.AcquisitionSearch class method) get_component_spectrum() (aghplctools.data.sample.DADSpectrum method) get_intensities_from_signal() (aghplctools.data.sample.DADSpectrum method) get_ion_intensities() (aghplctools.data.sample.MSSpectrum method)

get_signals_in_directory() (aghplctools.data.sample.DADSignalInfo class method) get_spectrum_of_retention_period() (aghplctools.data.sample.MSSpectrum method) get_tic_of_function() (aghplctools.data.sample.MSSpectrum method) get_timepoints_of_function() (aghplctools.data.sample.MSSpectrum method) get_values_from_acaml() (aghplctools.data.sample.HPLCSampleInfo class method) get_values_from_agilent_string() (aghplctools.data.sample.DADSignalInfo class method) get_values_from_result_xml() (aghplctools.data.sample.HPLCSampleInfo class method) get_values_from_sample_xml() (aghplctools.data.sample.HPLCSampleInfo class method) get_values_from_xml() (aghplctools.data.sample.HPLCSampleInfo class method)

H

HPLCSample (class in aghplctools.data.sample)

HPLCSampleInfo (class in aghplctools.data.sample) HPLCTarget (class in aghplctools.data.time_course)

I

instances (aghplctools.local_paths.AcquisitionSearch attribute)

K

kill_all_monitors() (aghplctools.local_paths.AcquisitionSearch class method)

kill_monitor() (aghplctools.local_paths.AcquisitionSearch method)

M

masses (aghplctools.data.sample.MSSpectrum attribute) maximum_wavelength_array (aghplctools.data.sample.DADSpectrum attribute) mean_referenced_intensities (aghplctools.data.sample.DADSignal attribute)

mean_unreferenced_intensities (aghplctools.data.sample.DADSignal attribute) method_path (aghplctools.local_paths.ChemStationConfig attribute) MSSpectrum (class in aghplctools.data.sample)

N

newsorted_subdirectories (aghplctools.local_paths.AcquisitionSearch attribute)

P

parent_of_any_path() (aghplctools.local_paths.AcquisitionSearch class method) parent_of_path() (aghplctools.local_paths.AcquisitionSearch method) parse_area_report() (in module aghplctools.ingestion.text) plot() (in module aghplctools.data.time_course) pull_hplc_area() (in module aghplctools.ingestion.text)

pull_hplc_area_from_csv() (in module aghplctools.ingestion.csv) pull_hplc_area_from_txt() (in module aghplctools.ingestion.text) pull_hplc_data_from_folder() (in module aghplctools.data.batch) pull_hplc_data_from_folder_timepoint() (in module aghplctools.data.batch) pull_metadata_from_csv() (in module aghplctools.ingestion.csv)

R

reference (aghplctools.data.sample.DADSignal attribute) (aghplctools.data.sample.DADSignalInfo attribute) registered_chemstations (aghplctools.local_paths.ChemStationConfig attribute) report_text_to_xlsx() (in module aghplctools.ingestion.text) retention_times (aghplctools.data.sample.DADSignal attribute) (aghplctools.data.sample.DADSpectrum attribute) (aghplctools.data.sample.MSSpectrum attribute)

retrieve_index() (aghplctools.data.time_course.HPLCTarget method) retrieve_metadata_from_channel() (in module aghplctools.data.sample) retrieve_timepoint() (aghplctools.data.time_course.HPLCTarget method)

S

sequence_is_running() (aghplctools.local_paths.AcquisitionSearch class method) sequence_path (aghplctools.local_paths.ChemStationConfig attribute) stackedplot() (in module aghplctools.data.time_course) start_monitor() (aghplctools.local_paths.AcquisitionSearch method)

start_monitoring_all_paths() (aghplctools.local_paths.AcquisitionSearch class method) strptime_agilent_dt() (in module aghplctools.data.sample) subdirectories (aghplctools.local_paths.AcquisitionSearch attribute) summed_intensity_array (aghplctools.data.sample.MSSpectrum attribute) summed_spectrum (aghplctools.data.sample.MSSpectrum attribute)

T

timestamp (aghplctools.data.sample.HPLCSampleInfo attribute)

total_absorbance_chromatogram (aghplctools.data.sample.DADSpectrum attribute)

U

unreferenced_intensities (aghplctools.data.sample.DADSignal attribute)

W

wait_for_acquiring() (aghplctools.local_paths.AcquisitionSearch class method) wavelength (aghplctools.data.sample.DADSignal attribute) (aghplctools.data.sample.DADSignalInfo attribute) wavelengths (aghplctools.data.sample.DADSpectrum attribute)

write_signal_to_csv() (aghplctools.data.sample.DADSignal method) write_signals_to_csv() (aghplctools.data.sample.HPLCSample method) write_signals_to_xlsx() (aghplctools.data.sample.HPLCSample method) write_to_allotrope() (aghplctools.data.sample.DADSpectrum method)